10 or greater coverage, less than 1000 coverage

# = 1244 unique contigs

2479 SNPs

LTmuscle_454_SP_blastall_tophit.txt
snpSOLIDLean.txt

joining and filter by evalue

LESS than 1.00E-4

514 unique SPIDS

NOTE to get Background also filtered on evalue

Functional Annotation Chart

#= 2240 SNPs

1115 unique contigs

502 unique SPIDS

both lean and siscowets in this file the is ready for DAVID

Functional Annotation Chart for Sisco

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DAVID 

lean and sisco

filter on Pvalue 0.05

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notes

after looking at Revigo - Enriched stuff, could replicate SNP discovery using 454.

And after RNA-seq is done we could consider tiieing it together (the RNA-seq and the SNPs)